2018

• Evolutionary Analysis As a Powerful Complement to Energy Calculations for Protein Stabilization

  BEERENS Koen MAZURENKO Stanislav KUNKA Antonín MARQUES Sérgio Manuel HANSEN N. MUSIL Miloš CHALOUPKOVÁ Radka WATERMAN Jitka BREZOVSKÝ Jan BEDNÁŘ David PROKOP Zbyněk DAMBORSKÝ Jiří

  Article in Periodical

  ACS Catalysis, year: 2018, volume: 8, edition: 10, DOI

2017

• Catalytic Cycle of Haloalkane Dehalogenases Toward Unnatural Substrates Explored by Computational Modeling

  MARQUES Sérgio Manuel DUNAJOVÁ Zuzana PROKOP Zbyněk CHALOUPKOVÁ Radka BREZOVSKÝ Jan DAMBORSKÝ Jiří

  Article in Periodical

  JOURNAL OF CHEMICAL INFORMATION AND MODELING, year: 2017, volume: 57, edition: 8, DOI

2016

• Discovery of Novel Haloalkane Dehalogenase Inhibitors

  BURYŠKA Tomáš DANIEL Lukáš KUNKA Antonín BREZOVSKÝ Jan DAMBORSKÝ Jiří PROKOP Zbyněk

  Article in Periodical

  Applied and Environmental Microbiology, year: 2016, volume: 82, edition: 6, DOI

• Engineering a de Novo Transport Tunnel

  BREZOVSKÝ Jan BABKOVÁ Petra DEGTJARIK Oksana FOŘTOVÁ Andrea GÓRA Artur Wiktor IERMAK L. ŘEZÁČOVÁ Petra DVOŘÁK Pavel KUTÁ-SMATANOVÁ Ivana PROKOP Zbyněk CHALOUPKOVÁ Radka DAMBORSKÝ Jiří

  Article in Periodical

  ACS Catalysis, year: 2016, volume: 6, edition: 11, DOI

• Role of Tunnels and Gates in Enzymatic Catalysis

  MARQUES Sérgio Manuel BREZOVSKÝ Jan DAMBORSKÝ Jiří

  Chapter of a book

  UNDERSTANDING ENZYMES: FUNCTION, DESIGN, ENGINEERING, AND ANALYSIS, year: 2016, number of pages: 43 s.

2015

• Exacerbation of Substrate Toxicity by IPTG in Escherichia coli BL21(DE3) Carrying a Synthetic Metabolic Pathway

  DVOŘÁK Pavel CHRÁST Lukáš NIKEL Pablo Ivan FEDR Radek SOUČEK Karel SEDLÁČKOVÁ Miroslava CHALOUPKOVÁ Radka LORENZO DE Víctor PROKOP Zbyněk DAMBORSKÝ Jiří

  Article in Periodical

  Microbial Cell Factories, year: 2015, volume: 14, edition: December, DOI

• FireProt: Energy- and Evolution-Based Computational Design of Thermostable Multiple-Point Mutants

  BEDNÁŘ David BEERENS Koen ŠEBESTOVÁ Eva BENDL Jaroslav KHARE S. CHALOUPKOVÁ Radka PROKOP Zbyněk BREZOVSKÝ Jan BAKER D. DAMBORSKÝ Jiří

  Article in Periodical

  PLOS COMPUTATIONAL BIOLOGY, year: 2015, volume: 11, edition: 11, DOI

• Mechanism-Based Discovery of Novel Substrates of Haloalkane Dehalogenases using in Silico Screening

  DANIEL Lukáš BURYŠKA Tomáš PROKOP Zbyněk DAMBORSKÝ Jiří BREZOVSKÝ Jan

  Article in Periodical

  Journal of Chemical Information and Modeling, year: 2015, volume: 55, edition: 1, DOI

2014

• A Pseudomonas putida Strain Genetically Engineered for 1,2,3-Trichloropropane Bioremediation.

  GHUFRANA S. PAVLOVÁ Martina ARIF M.I. POSTEMA C.P. DAMBORSKÝ Jiří JANSSEN D.B.

  Article in Periodical

  Applied and Environmental Microbiology, year: 2014, volume: 80, edition: 17, DOI

• Caver Analyst 1.0

  KOZLÍKOVÁ Barbora ŠEBESTOVÁ Eva ŠUSTR Vilém BREZOVSKÝ Jan STRNAD Ondřej DANIEL Lukáš BEDNÁŘ David PAVELKA Antonín MAŇÁK Martin BEZDĚKA Martin BENEŠ Petr KOTRY Matúš GORA Artur Wiktor DAMBORSKÝ Jiří SOCHOR Jiří

  Year: 2014